Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs2294859 chr6:53159576 A/G 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs2294860 chr6:53136261 T/C 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs2294870 chr6:53156464 A/C 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs233269 chr21:46039770 G/T 9.14E-8 499 11.08 21.83 22.78 KM Plot
LGG rs233271 chr21:46041734 G/T 7.49E-8 494 11.08 21.83 22.83 KM Plot
LGG rs2335775 chr8:459489 G/C 2.91E-5 505 23.52 20.9 12.72 KM Plot
LGG rs2383292 chr9:23793644 C/G 7.76E-5 509 12.4 20.17 23.53 KM Plot
LGG rs2388061 chr12:39302862 T/G 0 507 21.7 27.13 1.23 KM Plot
LGG rs2415997 chr14:46930446 A/C 4.19E-10 509 22.12 26.25 14.5 KM Plot
LGG rs2490594 chr9:123249744 G/T 2.25E-7 509 5.07 26.23 21.7 KM Plot
LGG rs2541462 chr16:10843374 T/A 2.16E-5 509 23.53 20.37 8.17 KM Plot
LGG rs2541465 chr16:10839619 T/C 2.31E-5 506 23.53 20.37 8.17 KM Plot
LGG rs2542824 chr14:77687050 A/G 4.07E-7 505 10.5 24.18 22.03 KM Plot
LGG rs2697649 chr16:10835117 T/C 2.25E-5 503 23.53 20.32 8.17 KM Plot
LGG rs2697650 chr16:10833794 C/G 2.25E-5 503 23.53 20.32 8.17 KM Plot